Programas
on-line & Softwares |
|
Desenho
de Primers |
Primer
Generator - automated generator of primers for site-directed mutagenesis.
Web Primer
Operon Technologies
- Oligo Analysis & Plotting Tool
Primer3
- pick primers from a DNA sequence
Consensus
Degenerate Hybrid Oligonucleotide Primers - PCR primers designed
from protein multiple sequence alignments
NetPrimer
- Primers are analyzed for melting temperature and all secondary structures.
|
Análise
de seqüencias e manipulação |
REBASE
- The Restriction Enzyme Database
Codon Usage Database
Gene Codes Corporation
- international bioinformatics firm specializing in research software
for DNA sequencing and analysis.
Entelechon
- Free online bioinformatics tools: Protein backtranslation, Sequence
inversion, Create a Codon Usage Table from a gene, Codon Usage table
analysis, DNA Reader (reads DNA sequences aloud).
Webcutter
- Analyze restriction maps of sequences.
DAN:
DNA / RNA Melting Temperature
|
Desenho de Plasmídios |
WebPlasmid
- Programa online para esquematizar e desenhar plasmidios
|
Alinhamento de sequências |
Guide
to Biosequence Comparison - resumo dos conceitos b�sicos de alguns
programas populares de compara��o de sequencias e com links para estes
programas
|
Estruturas
3D |
RasMol
Home Page - programas gratuitos para visualizar estruturas moleculares.
Chime - plugin do
Netscape e IE para visualizar e interagir com com moleculas 3D de
DNA e proteinas.
VMD - Visual Molecular
Dynamics - molecular visualization program for displaying, animating,
and analyzing large biomolecular systems using 3-D graphics and built-in
scripting.
NAMD - parallel molecular dynamics code designed for high-performance
simulation of large biomolecular systems.
Java Molecular Viewer - JMV - several molecular representations,
multiple coloring styles, lighting controls, and stereoscopic rendering
capabilities.
|
Análise
de proteínas |
Swiss-PdbViewer
- is an application that provides a user friendly interface allowing
to analyze several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare
their active sites or any other relevant parts. Amino acid mutations,
H-bonds, angles and distances between atoms are easy to obtain thanks
to the intuitive graphic and menu interface.
Protein Sequence Analysis
server - predicts probable secondary structures and folding classes
for a given amino acid sequence.
TMpred
- makes a prediction of membrane-spanning regions and their orientation.
TMHMM
Server - Prediction of transmembrane helices in proteins
|