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Bioinformatics Tools

Format Conversion

-Combine FASTA
-EMBL to FASTA
-EMBL Feature Extractor
-EMBL Trans Extractor
-Filter DNA
-Filter Protein
-GenBank to FASTA
-GenBank Feature Extractor
-GenBank Trans Extractor
-One to Three
-Range Extractor DNA
-Range Extractor Protein
-Reverse Complement

-Split FASTA
-Three to One

Sequence Analysis

-Codon Plot
-Codon Usage
-CpG Islands
-DNA Pattern Find
-DNA Stats
-Fuzzy Search DNA
-Fuzzy Search Protein
-Identity and Similarity
-Multi Rev Trans
-Mutate for Digest
-ORF Finder
-Pairwise Align Codons
-Pairwise Align DNA
-Pairwise Align Protein
-PCR Primer Stats
-PCR Products
-Protein GRAVY
-Protein Isoelectric Point
-Protein Molecular Weight
-Protein Pattern Find
-Protein Stats
-Restriction Digest
-Restriction Summary
-Reverse Translate
-Translate DNA

Sequence Figures

-Color Align Conservation
-Color Align Properties
-Group DNA
-Group Protein
-Primer Map
-Restriction Map
-Translation Map

Random Sequences

-Mutate DNA
-Mutate Protein
-Random Coding DNA
-Random DNA Sequence
-Random DNA Regions
-Random Protein Sequence
-Random Protein Regions
-Sample DNA
-Sample Protein
-Shuffle DNA
-Shuffle Protein

Miscellaneous

-IUPAC codes
-Genetic codes
-Browser compatibility
-About this site
-Acknowledgments
-Reference

The Sequence Manipulation Suite Copyright © 2000, 2004 Paul Stothard. Send questions and comments to [email protected]

Sexta, 31 de Outubro de 2025

Fuzzy Search DNA

Fuzzy Search DNA accepts a DNA sequence along with a query sequence and returns sites that are identical or similar to the query. You can use this program, for example, to find sequences that can be easily mutated into a useful restriction site.

Enter the sequence to search (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.

Enter the query sequence into the text area below. Input limit is 30 characters.

Please check the browser compatibility page before using this program.

Use the following parameters to specify how hits are scored, and to control which hits are returned.

Match value
Mismatch value
Gap penalty
Report the the top hits.

*This page requires JavaScript. See browser compatibility.

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Bioinformatics Tools is powered by Sequence Manipulation Suite version 2. See the about the Sequence Manipulation Suite page for more information about individual Sequence Manipulation Suite programs.
Send questions and comments to [email protected].

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