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Bioinformatics menu
.: Bioinformatics Resource Centers
.: Databases:
DNA and RNA
Carbohydrate
Proteins
Organisms and Genomes
Genes and Proteins
Phylogeny
.: Tools:
Sequence Analysis / Comparisons
Analysis of Genes and Coding Regions
Metabolic Analysis
Domain Motif Analysis
Structure Analysis
.: Programming
Genes and Proteins Databases
AAA
- AAA family of ATPases server
Acetylcholinesterases
ADB
- Albinism db (Mutations in human genes causing albinism)
ALDH
- Aldehyde dehydrogenase gene superfamily database
AARSDB
- Aminoacyl-tRNA synthetases database
Alpha-glucosidase
- Information about human acid alpha-glucosidase (GSD-II)
AMSDb
- Antimicrobial sequences database
AR mutations
- Human androgen receptor mutation database
Antibody resource page
- Links to antibody related Web resources
Asthma and Allergy gene
database
Australian venom and toxin
database
BIOMDB
- database of mutations causing tetrahydrobiopterin deficiencies
TFII
- Basal transcription factors
BCGD
- Breast cancer genes db from MBCR
BRENDA
- database of enzyme functional data
BTKbase
- Human BTK mutation database (X-linked agammaglobulinemia)
EF-hand CaBP
- EF-hand calcium-binding proteins database
CANSITE
- Signal Transduction's Web
CAZy
- Carbohydrate-Active enZYmes Web site
CBS domain
- Cystathionine Beta Synthase domain WWW page
CD antigens in PROW
- Database on information about CD antigens
Chaperonin
- Information on GroEL and GroES chaperonins
COL1/3 mutation
- Human Type I and III collagen mutation database
Conotoxins
- Information on conotoxins from a Web site on cone shells
CFTR mutation
- Human cystic fibrosis mutation database (CFTR)
Cytokines Web
- Structure and function of cytokines and their receptors
COPE
- Cytokines On-line Pathfinder Encyclopedia [Mirror in
Israel
]
dbCFC
- Cytokine family cDNA database
R&D Systems' Cytokine Source Book
DExH/D protein family
database
DPInteract
- DNA-Proteins interactions database
EMD
database - Human Emerin (EMD) mutation database (Emery-Dreifuss muscular dystrophy)
Worthington enzyme manual
Eph
- Eph receptor tyrosine kinases and their ligands (ephrins) resource
EpoDB
- Erythropoiesis gene expression database (Epo GED)
ESTHER
- Esterases and alpha/beta hydrolase enzymes
Expansins web site
Modules
- Extracellular proteins modules (domains)
KMeyeDB
- Eye disease genes database
FVII mutation
- Human Factor VII mutation database
HAMSTeRS
- Human Factor VIII mutation database (Haemophilia A)
HAeMB
- Human Factor IX mutation database (Haemophilia B)
FADPNR
- FAD-dependent pyridine nucleotide oxidoreductases
FBN1 mutation
- Human fibrillin 1 mutation database (Marfan syndrome)
Flavodoxins
FlyNets
- database of molecular interactions in Drosophila melanogaster
FYVE finger domain
G6PD
- Human G6PD deficiency resource
Galt mutation
- Human galactose-1-phosphate uridylyltransferase mutation database (Galactosemia)
Globin
- Globin gene server
Glucoamylases
Glycosyl hydrolases in SWISS-PROT
- Nomenclature and index of glycosyl hydrolases in SWISS-PROT
GCRDb
- G protein-coupled receptor database
GPCRDB
- G protein-coupled receptor database (7TM) at EMBL
ORDB
- Olfactory receptor database
GRAP
- G protein coupled receptors family A mutants database
GRR
- Glucocorticoid receptor resource
Glycosyltransferases
- A guide to cloned glycosyltransferases
GnRH
- Gonadotropin-releasing hormones (GnRH) family
GyrB
- GyrB protein
Yeast RNA helicases
HEXAdb
- Human Hexosaminidase A mutation database (Tay-sachs disease)
Histone
- Histones database
HIVdb
- HIV protease database
HotMolecBase
- Molecules (mainly proteins) that are promising targets for medical applications
Homeobox
- Homeobox domain proteins resource
HOX-Pro
- Homeobox genes database
Labial
- Homeobox genes, labial family
HSP100
- HSP100/ClpAB family of chaperones
IL2RGbase
- Human IL2RG (Interleukin-2 receptor gamma) mutation database (X-SCID)
InBase
- Inteins database from the New England Biolabs
Integrins
ICN
- The Ion Channel Network
KEGG
- Kyoto Encyclopedia of Genes and Genomes
Kinesin
- Kinesin motor proteins
Klotho
- Biochemical compounds declarative database
L1CAM mutation
- Human L1CAM mutation database
LDLR mutation
- Human LDLR mutation database (Familial hypercholesterolemia)
LGIC
- Ligand Gated Ion Channel subunit database
LED
- Lipase Engineering Database
MDB
- Metalloprotein Site Database and Browser
MT
- Metallothioneins
MHCPEP
- MHC binding peptides database
Mitochondrial carriers pages from Nelson's lab
MitoPick
- Mitochondrial NADH-ubiquinone reductase (complex I) web site
MRR
- Mineralocorticoid receptor resource
Mutator
- Transposases, Mutator family
MutBase
- Mutation spectra database (database on mutants of several bacterial and mammalian genes)
MutS
- MutS family
Neuromuscular diseases web site
NCL
- Neuronal Ceroid Lipofuscinoses mutation database
Neurotrophic factors
OTCase
- Human ornithine transcarbamylase (OTCase) website
O-GlycBase
- O-glycosylated proteins database
P450 pages from Nelson's lab
P450
- Directory of P450-containing systems
Cytochrome P450 alleles nomenclature
IARC p53
database - IARC database of somatic p53 mutations
p53 mutation
database - University of Tokyo p53 mutation database
Germline p53 mutation
database - University of Prague database of germline p53 mutations
PAHdb
- Human phenylalanine hydroxylase (PAH) mutation database
PAX6 mutation
- Human PAX6 mutation database
PhosphoBase
- Phosphorylation sites database
PDE
- Phosphodiesterases
Peroxidases
Plant Peroxidases
MEROPS
- Peptidase database
Prolysis
- Proteases and inhibitors server
Protein Degradation Resource
PLACE
- Plant cis-acting regulatory DNA elements database
PlantCARE
- Plant cis-acting regulatory DNA elements database
PKR
- Protein Kinase Resource
PatBase
- P-type ATPase database
PPDB
- Phosphoprotein database
Prion
- Prion and prion disease web site
Proteoglycans
Phytochromes
- Computer analysis of phytochrome sequences
RB1base
- Human retinoblastoma-associated protein mutation database
RecA
- RecA protein
REBASE
- Restriction enzymes and methylases database
RetNet
- Retinal Information Network
Retina International Scientific Newsletter
- Information on Retinal genes, proteins and diseases
Ribosomal proteins
- Analysis of R proteins by Nikos Kyrpides
RNase P
- Ribonuclease P database
SPAD
- Signaling pathway database
CSNDB
- Cell Signaling Networks database
SRPDB
- Signal Recognition Particle database
SNF2
- SNF2 family
TRR
- Thyroid hormone receptors resource
Topoisomerases
- Type I and II topoisomerases
TRANSFAC
- Transcription factors database
TSC2
- Cardiff-Rotterdam Tuberous Sclerosis (TS) database (Tuberin = TSC2 mutation database)
TGDB
- Tumor gene database
Transport Classification System
- from Milton Saier
UDP Glucuronosyltransferases
V BASE
- Directory of human V gene sequences (Immunoglobulin germline variable region)
VDRR
- Vitamin D receptor resource
VMD2 mutation
- Human VMD2 mutation database
vWF mutation
- Human von Willebrand factor (vWF) mutation database
WD-repeat
- WD-repeat proteins family
WIT
- 'What is There' metabolic models database
WormPep
- C.elegans proteins database
WRN
- Human WRN mutation database (Warner disease)
WT1 mutation
- Human WT1 mutation database
YTPdb
- Yeast Transport Protein database
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